Monthly Archives: December 2015

Fifth Irish Supercomputer List Released

The fifth Irish Supercomputer List (December 2015) was released today.

There are three new installations for the fifth list for a total of 28,  with two from Trinity College Dublin (#9 and 10) and one from University College Dublin (#11). The combined number of CPU cores on the current list is over 75,000. The list also shows that Ireland is following a global trend of harnessing coprocessor technologies for HPC with over one fifth of the machines on the list making use of accelerators including GPU and Xeon Phi, with a combined total of over 106,000 cores. The total performance of all machines is 678 Tflops/s.

Press clippings:

EpimiRBase: A comprehensive database of microRNA-epilepsy associations

EpimiRBase was established in 2015 in order to provide complete and up-to-date information on all publications relating to microRNA and epilepsy. The fully-searchable database includes information on up- and down-regulated microRNAs in the brain and blood, as well as functional studies, and covers both experimental models and human epilepsy. We hope you find this a useful resource for your research.

Epilepsy is one of the most common neurological disorders, affecting approximately 65 million people worldwide. It is characterized by recurring seizures; abnormal, synchronous firing of groups of neurons within the brain that disrupt sensory, motor and other brain functions. Although anti-epileptic drugs help control seizures for a majority of patients, about 1 in 3 patients are drug-resistant and there is no cure for epilepsy. Analysis of brain tissue from patients and experimental models suggests there are large-scale changes in gene expression within affected brain regions. Understanding what controls gene expression may open new avenues for treatment or prevention of epilepsy.

MicroRNAs are short non-coding RNAs which function to fine-tune protein levels in all cells. They achieve this mainly by sequence-specific binding to 3’untranslated regions of target mRNA. The result is post-transcriptional interference in gene expression which reduces protein levels either by promoting destabilisation of mRNA or translational repression. Research published since 2010 shows that microRNAs are important regulators of gene expression in epilepsy, altering levels of proteins that control cell death, inflammation, re-wiring of neuronal networks and other cell functions. MicroRNAs have also been identified in the blood after injury to the brain which may serve as biomarkers of epilepsy.

Visit EpimirBase today and please let me know if if you find it useful or have questions.